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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9345525_9349824_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9345525 - 9349824
Intron Length:
4300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACACTT
5'SS Class:
major
3'SS Sequence:
TCTTTCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATGC
Flanking Amino Acid:
PSRCCTPPVKLLEDDPWPRL
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.5
40.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
90.7
0.92
0.6
88.8
20.5
Minor 5ss
43.4
-0.7
3.2
65.6
45.4
Minor BPS
51.9
0.04
2
70.85
40.8

Associated Gene:

Gene:
PPM1D
Ensembl Gene ID:
ENSAPLG00000008276
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008599
9344079 - 9369036
24958