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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9351027_9359748_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9351027 - 9359748
Intron Length:
8722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TGTAATATAACA
Flanking Amino Acid:
IPFLAVARALGDLWSYDFYS
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
77.2
0.61
0.9
73
37.3
Minor 5ss
34.5
-1.8
3.3
46.4
44.2
Minor BPS
50.8
0.02
1.8
67.26
38.4

Associated Gene:

Gene:
PPM1D
Ensembl Gene ID:
ENSAPLG00000008276
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008599
9344079 - 9369036
24958