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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9359874_9362234_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9359874 - 9362234
Intron Length:
2361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTGATGCTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTTATAACC
Flanking Amino Acid:
ERERIEGLGGSVINKSGVNR
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
81.6
30.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.8
0.53
1
69.4
41.6
Minor 5ss
37.3
-1.4
3.3
52.6
44.6
Minor BPS
64
0.42
1.6
74.35
36.6

Associated Gene:

Gene:
PPM1D
Ensembl Gene ID:
ENSAPLG00000008276
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008599
9344079 - 9369036
24958