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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9362464_9368597_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9362464 - 9368597
Intron Length:
6134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
TTTCTCACTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTTTCTCACT
Flanking Amino Acid:
ACHRAMWKKLPEWPKTMTGL
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.3
66.7
40.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
84
0.76
0.8
78.6
28.6
Minor 5ss
42.4
-0.8
2.7
49.6
39.8
Minor BPS
56.5
0.29
2
83.74
37.5

Associated Gene:

Gene:
PPM1D
Ensembl Gene ID:
ENSAPLG00000008276
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008599
9344079 - 9369036
24958