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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9373161_9375882_R

Intron Information:

Intron Rank:
131842
Intron Class:
major
Intron Phase:
Intron Coordinates:
9373161 - 9375882
Intron Length:
2722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGTT
5'SS Class:
strong_major
3'SS Sequence:
GTCTGTATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
AAGTACTAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
81.3
32.8
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
76.4
0.59
0.9
69.7
40.3
Minor 5ss
36.8
-1.5
3.5
55
49.2
Minor BPS
48.8
-0
1.9
66.14
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018143
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034055
9369437 - 9376659
7223