About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9382874_9386288_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9382874 - 9386288
Intron Length:
3415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGATAA
5'SS Class:
major
3'SS Sequence:
GTCTTCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAATTTTTAAAT
Flanking Amino Acid:
MGAMLYQQGRLCQL
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
68.3
32.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84
0.76
0.8
81
31
Minor 5ss
43.5
-0.7
2.9
52.3
46.8
Minor BPS
64.2
0.52
1.3
73.49
36.8

Associated Gene:

Gene:
APPBP2
Ensembl Gene ID:
ENSAPLG00000008094
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029442
9382518 - 9395350
12833