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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9390761_9391483_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9390761 - 9391483
Intron Length:
723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
CTTTGTTCAATA
Flanking Amino Acid:
LLFAKSHYDEAYKWCIEAMK
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
75.5
0.63
1
66
40.9
Major PPT
73.5
0.53
0.9
70
35.3
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
51.8
0.05
2
66.76
40.7

Associated Gene:

Gene:
APPBP2
Ensembl Gene ID:
ENSAPLG00000008094
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029442
9382518 - 9395350
12833
ENSAPLT00000008465
9376680 - 9395667
18988