Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9409089_9409410_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9409089 - 9409410

Intron Length:

322

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAC|GTAAGGTTT

5'SS Class:

major

3'SS Sequence:

GTCTTTTCCCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTCAT

U12 Branch Point Sequence:

TGCTCATGTACA

Flanking Amino Acid:

CRASEVKHWKTMMWRFVSLF

Intron Amino Acid Position:

165

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

1.3

79.5

36.8

Major BPS

79.7

0.74

79.6

35.6

Major PPT

80.2

0.68

0.8

72.8

37.5

Minor 5ss

-0.6

3.4

63.7

41.4

Minor BPS

47.5

-0.2

2.1

62.44

42.9

Associated Gene:

Gene:

C17orf64

Ensembl Gene ID:

ENSAPLG00000026871

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041602

9404854 - 9411541

6688