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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9427528_9452267_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9427528 - 9452267
Intron Length:
24740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTACTCGATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTCCTCTTACTC
Flanking Amino Acid:
MEFVTDIELKRLK
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
71.6
0.49
1
65.5
40
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
57.8
0.23
1.6
66.76
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007802
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008113
9427518 - 9504005
76488