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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9473769_9474441_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9473769 - 9474441
Intron Length:
673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TAGTTCTAACAT
Flanking Amino Acid:
CRGPLAERQKFCFKVFDIDR
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
89.8
0.9
0.6
89.3
19.6
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
47.1
-0.1
2
65.53
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007802
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032455
9417702 - 9504005
86304
ENSAPLT00000031665
9452268 - 9512524
60257
ENSAPLT00000008113
9427518 - 9504005
76488