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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9479566_9479686_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9479566 - 9479686
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGTGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCATGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTCAACTAATC
Flanking Amino Acid:
ATPEEEGQIIRGWLERESRY
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
85.7
25.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
82.1
0.72
0.9
76.3
37.6
Minor 5ss
46.8
-0.3
2.7
66.4
45.1
Minor BPS
47.7
-0.2
2
67.38
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007802
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032455
9417702 - 9504005
86304
ENSAPLT00000031665
9452268 - 9512524
60257
ENSAPLT00000008113
9427518 - 9504005
76488