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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9489796_9490502_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9489796 - 9490502
Intron Length:
707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
ACTATATGAAGT
Flanking Amino Acid:
DMRLWLYNSENYLTLLDDED
Intron Amino Acid Position:
659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
82
29.3
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
90.2
0.9
0.6
85.5
21.7
Minor 5ss
36.6
-1.5
3.4
52
45.2
Minor BPS
44.3
-0.3
1.9
60.8
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007802
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032455
9417702 - 9504005
86304
ENSAPLT00000031665
9452268 - 9512524
60257
ENSAPLT00000008113
9427518 - 9504005
76488