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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9492598_9493216_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9492598 - 9493216
Intron Length:
619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
GTCCTTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
GTAACATTAAGT
Flanking Amino Acid:
QKNIAPLKLRWTIAKYAPRF
Intron Amino Acid Position:
793

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.7
44.5
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
80.8
0.69
0.8
76.4
32.2
Minor 5ss
37.4
-1.4
3
42.1
44.4
Minor BPS
53
0.17
2
72.13
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007802
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032455
9417702 - 9504005
86304
ENSAPLT00000031665
9452268 - 9512524
60257
ENSAPLT00000008113
9427518 - 9504005
76488