About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9499440_9499949_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9499440 - 9499949
Intron Length:
510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCGT
5'SS Class:
strong_major
3'SS Sequence:
CATTTTGTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TTGCATCTAACA
Flanking Amino Acid:
GNSCAWCPWYRFCRGCKIEC
Intron Amino Acid Position:
1158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
75.1
41.1
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
74.4
0.55
0.9
73.1
36.9
Minor 5ss
35.3
-1.7
3.1
50.5
45.8
Minor BPS
50.2
0
1.8
66.66
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007802
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008113
9427518 - 9504005
76488
ENSAPLT00000032455
9417702 - 9504005
86304
ENSAPLT00000031665
9452268 - 9512524
60257