About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9501832_9502153_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9501832 - 9502153
Intron Length:
322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTATTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CTTACCTTAATA
Flanking Amino Acid:
NTTNVLNNIKASPSLGRKSG
Intron Amino Acid Position:
1361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
87
30
Major BPS
80
0.75
1
78.6
31
Major PPT
85.1
0.79
0.7
78.5
34.6
Minor 5ss
36
-1.6
3.1
50.1
46.4
Minor BPS
77.6
0.86
1.2
80
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007802
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008113
9427518 - 9504005
76488
ENSAPLT00000032455
9417702 - 9504005
86304
ENSAPLT00000031665
9452268 - 9512524
60257