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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9502588_9503200_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9502588 - 9503200
Intron Length:
613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTCTTCTTCATT
Flanking Amino Acid:
NPIYNLYAISCHSGIMGGGH
Intron Amino Acid Position:
1506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1
70.1
43.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
86.3
0.82
0.7
84.8
29.8
Minor 5ss
40.1
-1.1
2.8
50.1
46.1
Minor BPS
66.4
0.6
1.7
82.74
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007802
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031665
9452268 - 9512524
60257
ENSAPLT00000008113
9427518 - 9504005
76488
ENSAPLT00000032455
9417702 - 9504005
86304