Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9504002_9512298_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9504002 - 9512298

Intron Length:

8297

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGCAGA

5'SS Class:

major

3'SS Sequence:

TTTTTTCCCTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

TTTTGTTATACT

Flanking Amino Acid:

ESDYKKYCVLQSSKWKQEVS

Intron Amino Acid Position:

1519

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.1

0.47

1.1

43.3

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

85.7

0.8

0.6

85.9

21.2

Minor 5ss

40.9

-1

2.9

54.3

43.8

Minor BPS

49.2

0.02

2.4

79.44

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007802

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031665

9452268 - 9512524

60257