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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9533421_9544437_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9533421 - 9544437
Intron Length:
11017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TAATTCTGAATG
Flanking Amino Acid:
SVHILKTEAVVGYHWCYQSQ
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.3
1.07
0.7
84.4
33.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
100
1.12
0.4
100
0
Minor 5ss
36.9
-1.5
3
51.2
45.2
Minor BPS
60.6
0.19
1.5
62.19
39.6

Associated Gene:

Gene:
CA4
Ensembl Gene ID:
ENSAPLG00000007520
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021494
9527571 - 9544495
16925