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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9555333_9555445_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9555333 - 9555445
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTGAGAGGA
5'SS Class:
major
3'SS Sequence:
CGTGTGCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
CGGGCCCTGACG
Flanking Amino Acid:
PYRCPRCAEAYCSVPCCREH
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1
57.6
35.3
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
65.7
0.35
1
57.9
38.5
Minor 5ss
26.2
-2.7
3.2
30.8
37.8
Minor BPS
46.3
-0.4
1.9
47.78
45.6

Associated Gene:

Gene:
ZNHIT3
Ensembl Gene ID:
ENSAPLG00000021693
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042340
9554984 - 9557170
2187