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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9557340_9558269_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9557340 - 9558269
Intron Length:
930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
AAAACATCAACT
Flanking Amino Acid:
GITSIRALPQGSVKFHCKKS
Intron Amino Acid Position:
925

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
71.9
34
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
84.9
0.78
0.7
77.7
31.1
Minor 5ss
37.1
-1.5
3.3
49.8
46.8
Minor BPS
49.6
0.05
1.8
67.84
41.7

Associated Gene:

Gene:
MYO19
Ensembl Gene ID:
ENSAPLG00000007223
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007517
9557211 - 9574320
17110