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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9559316_9559796_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9559316 - 9559796
Intron Length:
481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
ATCCCCATTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TGACTATTAACT
Flanking Amino Acid:
KTKVFMANSVLEQLEAKRAE
Intron Amino Acid Position:
751

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
74.5
41.9
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
73.7
0.53
0.9
66.5
33.5
Minor 5ss
43.1
-0.8
2.9
54.7
43.7
Minor BPS
61.7
0.44
1.6
76.56
39.1

Associated Gene:

Gene:
MYO19
Ensembl Gene ID:
ENSAPLG00000007223
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007517
9557211 - 9574320
17110