About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_95619_99274_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95619 - 99274
Intron Length:
3656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
CTTCCCTAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TCTTCCCTAATC
Flanking Amino Acid:
TANKVRSKLKSIEQSIEQEE
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
80.7
33.7
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
71.4
0.48
0.9
70.8
33.6
Minor 5ss
37.5
-1.4
3
47.9
41.8
Minor BPS
70.9
0.63
1.6
78.96
36.7

Associated Gene:

Gene:
STX1A
Ensembl Gene ID:
ENSAPLG00000006044
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006280
60795 - 139656
78862