About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9562432_9563271_R


Intron Information:

Intron Rank:
17

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
9562432 - 9563271

Intron Length:
840

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTAATTCTT

5'SS Class:
strong_major

3'SS Sequence:
ATTTATGTCTCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
AATTTAT

U12 Branch Point Sequence:
CCCACCTAAACC

Flanking Amino Acid:
CKALTFKKEEVLSQLQACGI

Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
86.9
0.87
0.9
83.7
34.8

Major BPS
79.9
0.74
0.9
69.7
37.1

Major PPT
76.5
0.6
0.9
73.6
40.9

Minor 5ss
40.2
-1.1
3.1
59.2
45.2

Minor BPS
52.7
0.06
1.8
58.43
46.7

Associated Gene:

Gene:
MYO19

Ensembl Gene ID:

Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

9557211 - 9574320
17110