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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9565553_9566966_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9565553 - 9566966
Intron Length:
1414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTACTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
TCTCTCTTACTT
Flanking Amino Acid:
FVAHYLKAQQEEYAAEGLQW
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
77.9
31
Major BPS
69.2
0.48
1
61
37.1
Major PPT
83.9
0.76
0.7
81.7
28.6
Minor 5ss
42.6
-0.8
3.1
59.6
45
Minor BPS
61.6
0.44
1.6
76.4
40.9

Associated Gene:

Gene:
MYO19
Ensembl Gene ID:
ENSAPLG00000007223
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007517
9557211 - 9574320
17110