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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9567258_9567544_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9567258 - 9567544
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGGCCA
5'SS Class:
major
3'SS Sequence:
TCATTGTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TCTTTTCCAACT
Flanking Amino Acid:
RDCLAKVIYAKLFEWLVSVI
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
66
39.6
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
79
0.65
0.9
73.1
37
Minor 5ss
32.7
-2
3.3
40.2
39.6
Minor BPS
53.6
0.19
1.9
76.16
40.8

Associated Gene:

Gene:
MYO19
Ensembl Gene ID:
ENSAPLG00000007223
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007517
9557211 - 9574320
17110