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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9568478_9568979_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9568478 - 9568979
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAAATC
5'SS Class:
major
3'SS Sequence:
TTTGGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTGAATAACA
Flanking Amino Acid:
WLPNSERNLDEDCFEVTRDA
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
74
34.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
84.3
0.77
0.8
81
36.6
Minor 5ss
37.5
-1.4
3.2
49.3
41.3
Minor BPS
53.5
0.11
2.3
77.79
38.6

Associated Gene:

Gene:
MYO19
Ensembl Gene ID:
ENSAPLG00000007223
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007517
9557211 - 9574320
17110