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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9569819_9570035_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9569819 - 9570035
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAAGTA
5'SS Class:
major
3'SS Sequence:
GGTAATTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TCACTGGTAATT
Flanking Amino Acid:
LDSNPVMEAFGNACTLRNNN
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
70.3
33.7
Major BPS
79
0.72
1
69
38.9
Major PPT
68.7
0.42
1
60.8
44.4
Minor 5ss
33.5
-1.9
3.6
43.7
45.9
Minor BPS
42.3
-0.5
2.5
61.07
43.4

Associated Gene:

Gene:
MYO19
Ensembl Gene ID:
ENSAPLG00000007223
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007517
9557211 - 9574320
17110