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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9570169_9570934_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9570169 - 9570934
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAC
U12 Branch Point Sequence:
CTACTGTCAAGT
Flanking Amino Acid:
IVSGESGAGKTWTSRCLMKF
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
52.9
0.07
1.1
59.6
32.7
Major PPT
82.4
0.73
0.8
76.8
31.8
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
40.8
-0.6
2.3
57.74
45

Associated Gene:

Gene:
MYO19
Ensembl Gene ID:
ENSAPLG00000007223
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007517
9557211 - 9574320
17110