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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9571433_9572202_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9571433 - 9572202
Intron Length:
770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
GTGTATCTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TACTTTTCAAAA
Flanking Amino Acid:
TKVNPVTMTTVLKCLQARYT
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
77.7
0.62
0.9
73.8
41.4
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
51.5
0.04
1.6
61.43
38.7

Associated Gene:

Gene:
MYO19
Ensembl Gene ID:
ENSAPLG00000007223
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007517
9557211 - 9574320
17110