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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9593266_9594235_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9593266 - 9594235
Intron Length:
970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGAGTA
5'SS Class:
major
3'SS Sequence:
ACTCTTCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TTTGGTCCAACT
Flanking Amino Acid:
LGRAEPEFAGGRRERHAKTI
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
67.8
37.5
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
79.7
0.67
0.7
77.6
30.4
Minor 5ss
39.7
-1.2
3.4
47
48.4
Minor BPS
45.5
-0.2
2.3
72.5
44.6

Associated Gene:

Gene:
GGNBP2
Ensembl Gene ID:
ENSAPLG00000006578
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040775
9580416 - 9598103
17688
ENSAPLT00000006906
9580416 - 9598103
17688