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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9629990_9631837_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9629990 - 9631837
Intron Length:
1848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAATGA
5'SS Class:
major
3'SS Sequence:
TTCCTGTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTGTTTTTAACA
Flanking Amino Acid:
STDDLRSFLKAKAAEGWEVL
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
62
39.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
81.5
0.71
0.8
79.7
32.2
Minor 5ss
35.3
-1.7
3.4
47.3
48.1
Minor BPS
79.5
0.92
1
82.37
32.8

Associated Gene:

Gene:
MRM1
Ensembl Gene ID:
ENSAPLG00000006433
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006666
9628636 - 9636627
7992