About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9636096_9636229_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9636096 - 9636229
Intron Length:
134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAAATA
5'SS Class:
major
3'SS Sequence:
AACTTTGCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTTAACT
Flanking Amino Acid:
IESLNVSVATGILLHSICSQ
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
75.9
33
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.5
0.51
1
65.3
40.4
Minor 5ss
36.5
-1.5
3.1
45.8
43.6
Minor BPS
82.1
1.09
1
91
32.8

Associated Gene:

Gene:
MRM1
Ensembl Gene ID:
ENSAPLG00000006433
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006666
9628636 - 9636627
7992