Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9650181_9663285_F

Intron Information:

Intron Rank:

136332

Intron Class:

major

Intron Phase:

Intron Coordinates:

9650181 - 9663285

Intron Length:

13105

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGATG

5'SS Class:

strong_major

3'SS Sequence:

GGATTGCTCCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTAAT

U12 Branch Point Sequence:

ATGTCACTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.2

0.97

0.8

82.5

Major BPS

74.4

0.61

0.9

73.6

28.6

Major PPT

64.8

0.33

54.3

45.6

Minor 5ss

35.9

-1.6

3.3

47.8

47.9

Minor BPS

55.8

0.26

1.9

76.54

39.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023474

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036022

9650035 - 9663911

13877