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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9663354_9663695_F

Intron Information:

Intron Rank:
136333
Intron Class:
major
Intron Phase:
Intron Coordinates:
9663354 - 9663695
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TTTAGCCCAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.7
37
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
83.4
0.75
0.8
77.6
31.1
Minor 5ss
27
-2.6
3.3
37.6
47.1
Minor BPS
43
-0.4
2.4
69.83
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023474
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036022
9650035 - 9663911
13877