Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9681902_9682817_F

Intron Information:

Intron Rank:

123660

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

9681902 - 9682817

Intron Length:

916

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTCTCT

5'SS Class:

weak_major

3'SS Sequence:

TCTTGCTACCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTCAT

U12 Branch Point Sequence:

TATTCCTTCATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.1

0.52

1.1

66.9

39.1

Major BPS

0.62

1.1

77.2

Major PPT

69.4

0.44

0.9

62.4

38.9

Minor 5ss

59.3

0.31

2.3

74.9

41.1

Minor BPS

74.5

0.85

1.7

89.11

35.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016684

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030592

9679031 - 9684670

5640