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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9684735_9695065_F

Intron Information:

Intron Rank:
123663
Intron Class:
major
Intron Phase:
Intron Coordinates:
9684735 - 9695065
Intron Length:
10331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ATGTATCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTTTGCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.7
44.5
Major BPS
100
1.24
0.5
100
0
Major PPT
77
0.61
0.9
69.6
40.8
Minor 5ss
37.4
-1.4
3
42.1
44.4
Minor BPS
46
-0.2
2.2
69.61
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016684
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045388
9681107 - 9695252
14146