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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9696527_9713426_F

Intron Information:

Intron Rank:
147011
Intron Class:
major
Intron Phase:
Intron Coordinates:
9696527 - 9713426
Intron Length:
16900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
CATCTTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
GGTTTTGTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
76.5
0.6
0.8
74.2
30.6
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
54.7
0.14
2
68.06
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029183
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023860
9696088 - 9714078
17991