Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9696527_9773977_F

Intron Information:

Intron Rank:

147010

Intron Class:

major

Intron Phase:

Intron Coordinates:

9696527 - 9773977

Intron Length:

77451

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGTGT

5'SS Class:

strong_major

3'SS Sequence:

CTGCTCCTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAGTGAT

U12 Branch Point Sequence:

AAGTGATGAAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.2

0.95

0.8

79.5

36.8

Major BPS

64.7

0.36

1.2

55.1

42.1

Major PPT

74.3

0.55

0.8

35.9

Minor 5ss

38.5

-1.3

3.4

55.9

48.3

Minor BPS

40.3

-0.8

2.1

42.79

41.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029183

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021211

9696088 - 9774815

78728