Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_973235_986317_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

973235 - 986317

Intron Length:

13083

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTTGC

5'SS Class:

strong_major

3'SS Sequence:

TGTTTCTTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

CTGACAGTGATT

Flanking Amino Acid:

LGKPDFIEVKGVTYCGESSA

Intron Amino Acid Position:

382

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.7

0.96

0.8

78.3

32.5

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

86.1

0.81

0.7

84.7

30.2

Minor 5ss

35.1

-1.7

2.8

43.9

Minor BPS

-0.4

2.2

60.34

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015683

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012307

912046 - 998764

86719

ENSAPLT00000016351

947344 - 1028965

81622