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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9818378_9859946_F

Intron Information:

Intron Rank:
147013
Intron Class:
major
Intron Phase:
Intron Coordinates:
9818378 - 9859946
Intron Length:
41569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GGGCTTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.7
0.56
0.7
65.8
30.2
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
48.3
-0
1.7
62.14
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029183
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034197
9773358 - 9860452
87095