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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9818378_9870523_F

Intron Information:

Intron Rank:
147014
Intron Class:
major
Intron Phase:
Intron Coordinates:
9818378 - 9870523
Intron Length:
52146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTTAA
U12 Branch Point Sequence:
TTTTTTTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
57
0.17
1.3
49.4
46
Major PPT
87.7
0.85
0.8
85.4
27.8
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
72.9
0.71
1.4
83
31.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029183
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044978
9818134 - 9870880
52747