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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9883098_9883233_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9883098 - 9883233
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
GCCGCCCGGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CGGTGAC
U12 Branch Point Sequence:
CAGCCGGTGACC
Flanking Amino Acid:
ETGLNMRVIQVWFQNRRSKE
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
47.5
-0.1
1.3
38.2
41.7
Major PPT
51.5
0.04
1.1
45.8
36.6
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
39.7
-0.8
2.5
47.51
42.5

Associated Gene:

Gene:
LHX1
Ensembl Gene ID:
ENSAPLG00000006228
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006457
9881971 - 9884051
2081