About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9883400_9883569_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
9883400 - 9883569
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GCTTGCCCGCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCGTCAC
U12 Branch Point Sequence:
CGGGCGTCACCT
Flanking Amino Acid:
IPNGPFSFYGDYQSEYYGPG
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
72.2
39.5
Major BPS
47.8
-0.1
1.4
51
44.3
Major PPT
59.2
0.21
1
51.3
39.3
Minor 5ss
29.2
-2.4
2.9
36.2
40.8
Minor BPS
38.6
-0.7
2.4
52.1
48.4

Associated Gene:

Gene:
LHX1
Ensembl Gene ID:
ENSAPLG00000006228
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006457
9881971 - 9884051
2081