Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9912375_9913118_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9912375 - 9913118

Intron Length:

744

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGGGTA

5'SS Class:

strong_major

3'SS Sequence:

TTTGTGCTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCAGTAT

U12 Branch Point Sequence:

CCTTCAGTATTT

Flanking Amino Acid:

PVPESLPENSEVLPQTDSNR

Intron Amino Acid Position:

439

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

73.5

37.5

Major BPS

48.9

-0

1.5

45.4

Major PPT

78.4

0.64

0.9

70.2

41.3

Minor 5ss

33.3

-1.9

3.7

47.1

48.3

Minor BPS

43.9

-0.3

2.4

64.23

46.6

Associated Gene:

Gene:

AATF

Ensembl Gene ID:

ENSAPLG00000006346

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006586

9893639 - 9941869

48231