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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9913203_9923239_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9913203 - 9923239
Intron Length:
10037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTGCTTTTAAAT
Flanking Amino Acid:
IFDDDDFYHQLLRELIERKT
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.7
0.71
0.8
77.2
31.6
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
59.3
0.37
1.4
70.97
39.8

Associated Gene:

Gene:
AATF
Ensembl Gene ID:
ENSAPLG00000006346
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006586
9893639 - 9941869
48231