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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9928653_9941706_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9928653 - 9941706
Intron Length:
13054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TGGGAAGTAATT
Flanking Amino Acid:
IDHCTMNDDARTELYRSLFG
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.5
1.05
0.7
92.2
16.5
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
79.4
0.66
0.7
72.1
32.5
Minor 5ss
32
-2.1
2.8
41.5
45.1
Minor BPS
40.8
-0.6
2.3
58.52
44.6

Associated Gene:

Gene:
AATF
Ensembl Gene ID:
ENSAPLG00000006346
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006586
9893639 - 9941869
48231