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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_99350_138736_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
99350 - 138736
Intron Length:
39387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTGAG
5'SS Class:
major
3'SS Sequence:
TCTTTCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTACAA
U12 Branch Point Sequence:
TCTACAACACAC
Flanking Amino Acid:
AILASPNPDEKTKEELEELM
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1
62.1
38.7
Major BPS
61
0.27
1.1
69.2
36.3
Major PPT
85.9
0.81
0.6
84.7
23
Minor 5ss
27.9
-2.5
3
27.6
37.5
Minor BPS
36
-1
2.1
47.16
41.3

Associated Gene:

Gene:
STX1A
Ensembl Gene ID:
ENSAPLG00000006044
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006280
60795 - 139656
78862