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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9949135_9950330_R

Intron Information:

Intron Rank:
53
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9949135 - 9950330
Intron Length:
1196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCAT
5'SS Class:
strong_major
3'SS Sequence:
CGTCTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAC
U12 Branch Point Sequence:
CGTCACTTAACT
Flanking Amino Acid:
SRDYILKQIRSLVQANPEVA
Intron Amino Acid Position:
2247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
77.9
38.6
Major BPS
68.3
0.45
1
69.6
32.8
Major PPT
81.5
0.71
0.8
72.7
37.5
Minor 5ss
39.5
-1.2
3.2
55.8
48.4
Minor BPS
67.7
0.63
1.6
79.66
41.7

Associated Gene:

Gene:
ACACA
Ensembl Gene ID:
ENSAPLG00000006678
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033706
9948784 - 10062330
113547
ENSAPLT00000039117
9947556 - 10064568
117013
ENSAPLT00000019744
9947556 - 10049194
101639
ENSAPLT00000039017
9947556 - 10062330
114775
ENSAPLT00000007210
9949008 - 10051639
102632
ENSAPLT00000038991
9948784 - 10062330
113547
ENSAPLT00000036264
9947556 - 10062330
114775