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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9950468_9953692_R

Intron Information:

Intron Rank:
52
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9950468 - 9953692
Intron Length:
3225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
GGTTTGCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGACAC
U12 Branch Point Sequence:
GTTTGCTCACAG
Flanking Amino Acid:
WFVEVEGTVKAYLWDSNKDL
Intron Amino Acid Position:
2202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
46
-0.2
1.3
52.4
43.3
Major PPT
72.3
0.5
1
64.8
41.4
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
43.3
-0.6
2.3
53.72
46.6

Associated Gene:

Gene:
ACACA
Ensembl Gene ID:
ENSAPLG00000006678
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036264
9947556 - 10062330
114775
ENSAPLT00000033706
9948784 - 10062330
113547
ENSAPLT00000039117
9947556 - 10064568
117013
ENSAPLT00000019744
9947556 - 10049194
101639
ENSAPLT00000039017
9947556 - 10062330
114775
ENSAPLT00000007210
9949008 - 10051639
102632
ENSAPLT00000038991
9948784 - 10062330
113547