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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9961604_9966278_R

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9961604 - 9966278
Intron Length:
4675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGCA
5'SS Class:
major
3'SS Sequence:
CCTTGTCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
GTGCCCTGACCC
Flanking Amino Acid:
NWRGFSGGMKDMYDQVLKFG
Intron Amino Acid Position:
1996

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
68.7
36.4
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
75
0.56
0.8
69
31.6
Minor 5ss
36.3
-1.6
3.3
48.6
47.1
Minor BPS
50.1
-0
1.8
61.79
43

Associated Gene:

Gene:
ACACA
Ensembl Gene ID:
ENSAPLG00000006678
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036264
9947556 - 10062330
114775
ENSAPLT00000033706
9948784 - 10062330
113547
ENSAPLT00000039117
9947556 - 10064568
117013
ENSAPLT00000019744
9947556 - 10049194
101639
ENSAPLT00000039017
9947556 - 10062330
114775
ENSAPLT00000007210
9949008 - 10051639
102632
ENSAPLT00000038991
9948784 - 10062330
113547